Product Overview
What Coyote3 is
Coyote3 is a workflow platform for molecular diagnostics interpretation and reporting.
It centralizes:
- sample intake and operational visibility
- DNA/RNA interpretation workflows
- assay-specific filtering and gene-list logic
- report generation and retrieval
- controlled access and governance
Primary user groups
- clinical analysts reviewing DNA/RNA findings
- molecular diagnosticians and bioinformatics users managing interpretation logic
- laboratory users tracking sample/report status
- administrators managing users, permissions, assays, schemas, and gene lists
Core modules
- Samples (
/samples): live and reported case worklists
- DNA (
/dna): SNV/CNV/translocation interpretation and report workflow
- RNA (
/rna): fusion interpretation and report workflow
- Dashboard (
/dashboard): operational monitoring
- Search (
/search/tiered_variants): cross-sample interpretation history
- Admin (
/admin): governance and runtime configuration
- Public (
/public): public-facing informational routes
Key concepts
- Live sample: case in active interpretation cycle
- Reported sample: case with one or more saved reports
- ISGL (In Silico Gene List): curated gene lists associated with assay context
- Ad-hoc genes: case-specific gene constraints stored in sample filters
- Effective genes: final gene set applied during filtering and interpretation
- ASP (Assay Specific Panel): panel definitions (
assay_specific_panels)
- ASPC (Assay Specific Panel Config): assay runtime/report configurations (
asp_configs)
Security posture
- authenticated sessions via login subsystem
- route-level permission enforcement
- sample-level access enforcement
- audit logging for critical user actions