Architecture Overview
Stack
- Flask (modular blueprints)
- MongoDB (PyMongo + handler-based data access)
- Flask-Login + LDAP integration
- Jinja2 templates + static assets
- Redis-backed Flask-Caching
App initialization
Entry in coyote/__init__.py via init_app(...):
- load config class (prod/dev/test)
- initialize login manager
- initialize Mongo extension and connectivity check
- initialize
MongoAdapter and handler wiring
- register blueprints
- initialize LDAP manager
- initialize utility layer
- attach request hooks and context processors
Blueprint modules and URL prefixes
/samples -> home/ -> login/profile -> user profile/dna -> DNA/rna -> RNA/ -> common routes/dashboard -> dashboard/cov -> coverage/admin -> admin/public -> public/handbook -> handbook
Cross-cutting concerns
- RBAC + permission decorators
- sample access decorators
- session refresh per request
- cache-backed dashboard and query patterns
- audit logging decorators